Visium mouse colon dataset

A Visium dataset obtained from a "swiss roll" of a mouse colon

mousecolon/filtered_feature_bc_matrix.h5:
light weight gene expression matrix with 188 genes in hdf5 format filtered to include spots under the tissue
mousecolon/spatial/tissue_lowres_image.jpg:
H&E image (600x541) pixels
mousecolon/spatial/tissue_positions_list.csv:
CSV file with spot coordinates
mousecolon/spatial/scalefactors_json.json:
JSON file with scalefactors
mousecolon/se_mcolon:
Seurat object stored as an .Rds file with the top 100 most variable features
mousecolon/galt_spots.csv:
CSV file with GALT spot barcodes

References