Visium mouse brain dataset

A Visium dataset obtained from a coronal tissue section of a mouse brain.

mousebrain/filtered_feature_bc_matrix.h5:
light weight gene expression matrix with 188 genes in hdf5 format filtered to include spots under the tissue
mousebrain/spatial/tissue_lowres_image.jpg:
H&E image (600x565) pixels
mousebrain/spatial/tissue_positions_list.csv:
CSV file with spot coordinates
mousebrain/spatial/scalefactors_json.json:
JSON file with scalefactors
mousebrain/se_mbrain:
Seurat object stored as an .Rds file with the top 100 most variable features

See also